PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003634.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 673aa    MW: 72068.7 Da    PI: 6.3663
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003634.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11547595355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  Do003634.1 547 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 595
                 58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.903.0E-71186No hitNo description
SuperFamilySSF813831.57E-12369419IPR001810F-box domain
PROSITE profilePS5018112.571369415IPR001810F-box domain
Gene3DG3DSA:1.20.1280.508.2E-11372424No hitNo description
PfamPF129372.6E-7374416IPR001810F-box domain
SMARTSM002564.4E-5375415IPR001810F-box domain
SuperFamilySSF474593.14E-17542611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-11542599No hitNo description
PROSITE profilePS5088815.796544594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17544611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-9547595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10550600IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MDARGGAAVE THRVDLPPTA TLADVKTLLA AKLSAAQPVP SESVRLSLNR SEELVSPDPT  60
ATLPALGLAS GDLVFFTLSP LTALAPPAQA LPQNPVPGSG SVPTAMAVDS GKGSEQPGTG  120
GSSLQVPAVA VNPSVPAASD PAEAVDGGQG EAVDGGKGSE QTGTGGSSLQ VRAVAMNPSV  180
PAATSPADVV MAEAVDATTT KVWSSFVIRD LKKEMENVSG AEGTASGRLV AALHAALLEV  240
GFLTTNPMGA HLSLPQDWPS VASKPLAIKY TIPELSPMLP VSEEGKVVVL NFSLMPNFVM  300
VYGYVPGAQS EVRRLCLELP RLEPLLYLDS DQLSGVQEMG ILDLWRVLKD ELCLPLMISL  360
CHLNGLRLPP CLMALPADLK TKVLDFLPGD DLARVECTCK EMRNLAADDS LWKKFILKLK  420
TYGEGSSGAM SAKAMFGEAW QANKRRQKRP HPTFWNYGWG NSPYSRPIRQ PLIDTQLSRN  480
MNTGKCLKGG KRKGSGEESS SLHSLDETSA LLQREVSMEC VDEKAGGAGT NKEDYVHVRA  540
KRGQATNSHS LAERFRREKI NERMKLLQDL VPGCNKITGK AMMLDEIINY VQSLQRQVEF  600
LSMKLSAISP ELNCNLDLQD ILCSQEARAA FPGYSPQMSS VHLNLFKASQ PAAFNFLGFL  660
KVHFGVADSM KVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698403.20.0PREDICTED: F-box protein SKIP22-like
TrEMBLK4A9E10.0K4A9E1_SETIT; Uncharacterized protein
STRINGSi035497m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-43bHLH family protein